cRegulome (0.2.0)

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Obtain and Visualize Regulome-Gene Expression Correlations in Cancer.

https://github.com/ropensci/cRegulome
http://cran.r-project.org/web/packages/cRegulome

Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.

Maintainer: Mahmoud Ahmded
Author(s): Mahmoud Ahmed [aut, cre]

License: GPL-3

Uses: DBI, ggplot2, ggridges, httr, igraph, R.utils, RSQLite, UpSetR, VennDiagram, testthat, knitr, rmarkdown, readxl, covr

Released 2 months ago.


2 previous versions

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