caRpools (0.82.3)

CRISPR AnalyzeR for Pooled CRISPR Screens.

http://www.crispr-analyzer.de
https://github.com/boutroslab/caRpools
http://cran.r-project.org/web/packages/caRpools

CRISPR-Analyzer for pooled CRISPR screens (caRpools) provides an end-to-end analysis of CRISPR screens including quality control, hit candidate analysis, visualization and automated report generation using R markdown. Needs MAGeCK (http://sourceforge.net/p/mageck/wiki/Home/), bowtie2 for all functions. CRISPR (clustered regularly interspaced short palindromic repeats) is a method to perform genome editing. See for more information on CRISPR.

Maintainer: Jan Winter
Author(s): Jan Winter, Florian Heigwer

License: GPL

Uses: rmarkdown, scatterplot3d, seqinr, sm, VennDiagram, xlsx, knitr, stringi

Released over 4 years ago.