caRpools (0.83)

CRISPR AnalyzeR for Pooled CRISPR Screens.

CRISPR-Analyzer for pooled CRISPR screens (caRpools) provides an end-to-end analysis of CRISPR screens including quality control, hit candidate analysis, visualization and automated report generation using R markdown. Needs MAGeCK (, bowtie2 for all functions. CRISPR (clustered regularly interspaced short palindromic repeats) is a method to perform genome editing. See for more information on CRISPR.

Maintainer: Jan Winter
Author(s): Jan Winter, Florian Heigwer

License: GPL

Uses: rmarkdown, scatterplot3d, seqinr, sm, VennDiagram, xlsx, knitr, stringi

Released almost 4 years ago.