ccRemover (1.0.4)

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Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data.

http://cran.r-project.org/web/packages/ccRemover

Implements a method for identifying and removing the cell-cycle effect from scRNA-Seq data. The description of the method is in Barron M. and Li J. (2016) . Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data. Submitted. Different from previous methods, ccRemover implements a mechanism that formally tests whether a component is cell-cycle related or not, and thus while it often thoroughly removes the cell-cycle effect, it preserves other features/signals of interest in the data.

Maintainer: Jun Li
Author(s): Jun Li [aut, cre], Martin Barron [aut]

License: GPL-3

Uses: knitr, rmarkdown

Released 4 days ago.


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