corHMM (1.20)

Analysis of Binary Character Evolution.

http://cran.r-project.org/web/packages/corHMM

Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.

Maintainer: Jeremy Beaulieu
Author(s): Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Jeffrey C. Oliver <jeffreycoliver@gmail.com>, Brian O'Meara <bomeara@utk.edu>

License: GPL (>= 2)

Uses: ape, corpcor, expm, GenSA, nloptr, numDeriv, phangorn

Released about 3 years ago.