cytometree (2.0.0)

Automated Cytometry Gating and Annotation.

Given the hypothesis of a bi-modal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bi-modal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families.

Maintainer: Boris Hejblum
Author(s): Chariff Alkhassim, Boris Hejblum, Anthony Devaux, Van Hung Huynh Tran

License: LGPL-3 | file LICENSE

Uses: cowplot, ggplot2, GoFKernel, igraph, mclust, Rcpp, knitr, rmarkdown, viridis

Released 8 months ago.