ddepn (2.1.4)

Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data..

http://cran.r-project.org/web/packages/ddepn

DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for timecourse data. Given a matrix of high-throughput genomic or proteomic timecourse data, generated after external perturbation of the biological system, DDEPN models the time-dependent propagation of active and passive states depending on a network structure. Optimal network structures given the experimental data are reconstructed. Two network inference algorithms can be used: inhibMCMC, a Markov Chain Monte Carlo sampling approach and GA, a Genetic Algorithm network optimisation. Inclusion of prior biological knowledge can be done using different network prior models.

Maintainer: Christian Bender
Author(s): Christian Bender

License: GPL (>= 2)

Uses: cluster, coda, gam, gplots, graph, igraph0, lattice, RBGL, BoolNet

Released almost 7 years ago.