dendextend (1.12.0)

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Extending 'dendrogram' Functionality in R.

https://github.com/talgalili/dendextend/
https://cran.r-project.org/package=dendextend
https://www.r-statistics.com/tag/dendextend/
https://academic.oup.com/bioinformatics/article/31/22/3718/240978/dendextend-an-R-package-for-visualizing-adjusting
http://cran.r-project.org/web/packages/dendextend

Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.

Maintainer: Tal Galili
Author(s): Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Yoav Benjamini [ths], Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Lucas Graybuck [ctb] (https://github.com/hypercompetent), jdetribol [ctb] (https://github.com/jdetribol), Ben Ho [ctb] (https://github.com/SplitInf), Samuel Perreault [ctb] (https://github.com/samperochkin), Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/)

License: GPL-2 | GPL-3

Uses: ggplot2, magrittr, viridis, cluster, colorspace, fpc, gplots, pvclust, seriation, ape, dynamicTreeCut, MASS, profdpm, testthat, corrplot, microbenchmark, knitr, DendSer, circlize, rmarkdown, covr, d3heatmap, heatmaply
Enhances: Hmisc, rpart, data.table, ggdendro, dendroextras
Reverse depends: dendextendRcpp, EnsCat, PdPDB, uclust
Reverse suggests: circlize, CluMix, dbscan, isocat, kmer, LocalControl, pergola, phylogram, plotly, propr, rare, Rnightlights

Released 5 months ago.


16 previous versions

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