dendextend (1.6.0)

0 users

Extending 'Dendrogram' Functionality in R.

https://github.com/talgalili/dendextend/
https://cran.r-project.org/package=dendextend
https://www.r-statistics.com/tag/dendextend/
https://academic.oup.com/bioinformatics/article/31/22/3718/240978/dendextend-an-R-package-for-visualizing-adjusting
http://cran.r-project.org/web/packages/dendextend

Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.

Maintainer: Tal Galili
Author(s): Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Yoav Benjamini [ths]

License: GPL-2 | GPL-3

Uses: fpc, ggplot2, magrittr, viridis, whisker, cluster, colorspace, gplots, pvclust, seriation, ape, dynamicTreeCut, plyr, MASS, profdpm, testthat, NMF, corrplot, microbenchmark, knitr, DendSer, circlize, rmarkdown, covr, d3heatmap, heatmaply
Enhances: Hmisc, rpart, data.table, labeltodendro, ggdendro, dendroextras
Reverse depends: dendextendRcpp, EnsCat, PdPDB
Reverse suggests: circlize, CluMix, dbscan, pergola, plotly, propr, Rnightlights

Released about 1 month ago.


11 previous versions

Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of dendextend yet. Want to be the first? Write one now.


Related packages: idendr0, AdMit, amap, bayesm, bayesmix, biclust, cba, cclust, CHsharp, clue, cluster, clusterfly, clusterGeneration, clusterRepro, clusterSim, clustvarsel, clv, clValid, compHclust, depmix(20 best matches, based on common tags.)


Search for dendextend on google, google scholar, r-help, r-devel.

Visit dendextend on R Graphical Manual.