denoiSeq (0.1.1)

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Differential Expression Analysis Using a Bottom-Up Model.

Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of a bottom-up model for PCR amplification. This model is developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), , and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution.

Maintainer: Gershom Buri
Author(s): Gershom Buri [aut, cre], Wilfred Ndifon [aut]

License: GPL-2

Uses: knitr, rmarkdown

Released almost 2 years ago.

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