diveRsity (1.9.90)

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A Comprehensive, General Purpose Population Genetics Analysis Package.

http://diversityinlife.weebly.com/
http://cran.r-project.org/web/packages/diveRsity

Allows the calculation of both genetic diversity partition statistics, genetic differentiation statistics, and locus informativeness for ancestry assignment. It also provides users with various option to calculate bootstrapped 95\% confidence intervals both across loci, for pairwise population comparisons, and to plot these results interactively. Parallel computing capabilities and pairwise results without bootstrapping are provided. Also calculates F-statistics from Weir and Cockerham (1984). Various plotting features are provided, as well as Chi-square tests of genetic heterogeneity. Functionality for the calculation of various diversity parameters is possible for RAD-seq derived SNP data sets containing thousands of marker loci. A shiny application for the development of microsatellite multiplexes is also available.

Maintainer: Kevin Keenan
Author(s): Kevin Keenan <kkeenan02@qub.ac.uk>

License: GPL (>= 2)

Uses: ggplot2, qgraph, Rcpp, shiny, plotrix, sendplot, xlsx, HWxtest
Reverse suggests: FinePop

Released 6 months ago.


16 previous versions

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