epoc (0.2.6-1.1)

1 user

Endogenous Perturbation Analysis of Cancer.

http://cran.r-project.org/web/packages/epoc

Estimates sparse matrices A or G using fast lasso regression from mRNA transcript levels Y and CNA profiles U. Two models are provided, EPoC A where AY + U + R = 0 and EPoC G where Y = GU + E, the matrices R and E are so far treated as noise. For details see the manual page of 'lassoshooting' and the article Rebecka Jrnsten, Tobias Abenius, Teresia Kling, Linna Schmidt, Erik Johansson, Torbjrn E M Nordling, Bodil Nordlander, Chris Sander, Peter Gennemark, Keiko Funa, Bjrn Nilsson, Linda Lindahl, Sven Nelander (2011) .

Maintainer: Tobias Abenius
Author(s): Rebecka Jornsten, Tobias Abenius, Sven Nelander

License: LGPL-3

Uses: elasticnet, irr, lassoshooting, Matrix, survival, graph

Released 3 months ago.


14 previous versions

Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of epoc yet. Want to be the first? Write one now.


Related packages:(20 best matches, based on common tags.)


Search for epoc on google, google scholar, r-help, r-devel.

Visit epoc on R Graphical Manual.