epoc (0.2.6-1.1)

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Endogenous Perturbation Analysis of Cancer.


Estimates sparse matrices A or G using fast lasso regression from mRNA transcript levels Y and CNA profiles U. Two models are provided, EPoC A where AY + U + R = 0 and EPoC G where Y = GU + E, the matrices R and E are so far treated as noise. For details see the manual page of 'lassoshooting' and the article Rebecka Jrnsten, Tobias Abenius, Teresia Kling, Linna Schmidt, Erik Johansson, Torbjrn E M Nordling, Bodil Nordlander, Chris Sander, Peter Gennemark, Keiko Funa, Bjrn Nilsson, Linda Lindahl, Sven Nelander (2011) .

Maintainer: Tobias Abenius
Author(s): Rebecka Jornsten, Tobias Abenius, Sven Nelander

License: LGPL-3

Uses: elasticnet, irr, lassoshooting, Matrix, survival, graph

Released 5 months ago.

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