fbar (0.5.2)

An Extensible Approach to Flux Balance Analysis.


A simple package for Flux Balance Analysis and related metabolic modeling techniques. Functions are provided for: parsing models in tabular format, converting parsed metabolic models to input formats for common linear programming solvers, and evaluating and applying gene-protein-reaction mappings. In addition, there are wrappers to parse a model, select a solver, find the metabolic fluxes, and return the results applied to the original model. Compared to other packages in this field, this package puts a much heavier focus on providing reusable components that can be used in the design of new implementation of new techniques, in particular those that involve large parameter sweeps.

Maintainer: Max Conway
Author(s): Max Conway [aut, cre]

License: GPL-3

Uses: assertthat, dplyr, magrittr, Matrix, purrr, rlang, ROI, ROI.plugin.ecos, stringr, tibble, tidyr, testthat, knitr, jsonlite, rmarkdown, curl, spelling

Released over 1 year ago.