gap (1.1-17)

1 user

Genetic Analysis Package.

http://people.ds.cam.ac.uk/jhz22/
http://cran.r-project.org/web/packages/gap

It is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates.

Maintainer: Jing Hua Zhao
Author(s): Jing Hua Zhao and colleagues with inputs from Kurt Hornik and Brian Ripley

License: GPL (>= 2)

Uses: Matrix, coda, foreign, haplo.stats, lattice, magic, nlme, regress, survival, MCMCglmm, R2jags, pedigree, pedigreemm, rms, bdsmatrix, coxme, MASS, BradleyTerry2, kinship2, mets
Reverse depends: PopGenReport, snpXpert
Reverse suggests: BayesianTools

Released 5 months ago.


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Related packages: adegenet, ape, Biodem, bqtl, dlmap, GenABEL, genetics, hapassoc, haplo.ccs, HardyWeinberg, haplo.stats, hwde, ibdreg, LDheatmap, luca, ouch, pbatR, phangorn, qtl, rmetasim(20 best matches, based on common tags.)


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