gene2pathway (1.8.1)

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Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures.

http://cran.r-project.org/web/packages/gene2pathway

The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.

Maintainer: Holger Froehlich
Author(s): Holger Froehlich <frohlich@bit.uni-bonn.de>, contributions by Tim Beissbarth <t.beissbarth@dkfz.de>

License: GPL (>= 2)

Uses: kernlab, RBGL, RCurl

Released over 7 years ago.


5 previous versions

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