gene2pathway (1.4.0)

Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures.

The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.

Maintainer: Holger Froehlich
Author(s): Holger Froehlich <>, contributions by Tim Beissbarth <>

License: GPL (>= 2)

Uses: kernlab, RBGL, RCurl

Released over 9 years ago.