genetics (

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Population Genetics.

Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...

Maintainer: Gregory Warnes
Author(s): Gregory Warnes, with contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man.

License: GPL

Uses: combinat, gdata, gtools, MASS, mvtnorm
Reverse depends: boostSeq, forensic, GenABEL, introgress, luca, MasterBayes, pedantics, PopGenReport, postgwas, snp.plotter
Reverse suggests: adegenet, forensim, GenABEL, HWxtest, postgwas, readGenalex

Released 10 months ago.

8 previous versions



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Related packages: Biodem, HardyWeinberg, LDheatmap, SNPmaxsel, adegenet, bqtl, gap, hapassoc, haplo.stats, hierfstat, hwde, ibdreg, ouch, pbatR, qtl, rmetasim, seqinr, snp.plotter, stepwise, tdthap(20 best matches, based on common tags.)

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