genotypeR (

0 users

SNP Genotype Marker Design and Analysis.

We implement a common genotyping workflow with a standardized software interface. 'genotypeR' designs genotyping markers from vcf files, outputs markers for multiplexing suitability on various platforms (Sequenom and Illumina GoldenGate), and provides various QA/QC and analysis functions. We developed this package to analyze data in Stevison LS, SA Sefick, CA Rushton, and RM Graze. 2017. Invited Review: Recombination rate plasticity: revealing mechanisms by design. Philosophical Transactions Royal Society London B Biol Sci 372:1-14. , and have published it here Sefick, S.A., M.A. Castronova, and L.S. Stevison. 2017. GENOTYPER: An integrated R packages for single nuleotide polymorphism genotype marker design and data analysis. Methods in Ecology and Evolution 9: 1318-1323. .

Maintainer: Stephen A Sefick Jr.
Author(s): Stephen Alfred Sefick [aut, cre], Magdelena A Castronova [aut], Laurie S Stevison [aut]

License: GPL (>= 3)

Uses: colorspace, doBy, plyr, reshape2, zoo, qtl, testthat, knitr, rmarkdown

Released 3 months ago.

2 previous versions



  (0 votes)


  (0 votes)

Log in to vote.


No one has written a review of genotypeR yet. Want to be the first? Write one now.

Related packages:(20 best matches, based on common tags.)

Search for genotypeR on google, google scholar, r-help, r-devel.

Visit genotypeR on R Graphical Manual.