genotypeR (0.0.1.8)

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SNP Genotype Marker Design and Analysis.

https://github.com/StevisonLab/genotypeR
http://cran.r-project.org/web/packages/genotypeR

We implement a common genotyping workflow with a standardized software interface. 'genotypeR' designs genotyping markers from vcf files, outputs markers for multiplexing suitability on various platforms (Sequenom and Illumina GoldenGate), and provides various QA/QC and analysis functions. We developed this package to analyze data in Stevison LS, SA Sefick, CA Rushton, and RM Graze. 2017. Invited Review: Recombination rate plasticity: revealing mechanisms by design. Philosophical Transactions Royal Society London B Biol Sci 372:1-14. , and have published it here Sefick, S.A., M.A. Castronova, and L.S. Stevison. 2017. GENOTYPER: An integrated R packages for single nuleotide polymorphism genotype marker design and data analysis. Methods in Ecology and Evolution 9: 1318-1323. .

Maintainer: Stephen A Sefick Jr.
Author(s): Stephen Alfred Sefick [aut, cre], Magdelena A Castronova [aut], Laurie S Stevison [aut]

License: GPL (>= 3)

Uses: colorspace, doBy, plyr, reshape2, zoo, qtl, testthat, knitr, rmarkdown

Released 3 months ago.


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