gsrc (1.1)

Genome Structure Rearrangement Calling in Genomes with High Synteny.

http://github.com/grafab/gsrc
http://cran.r-project.org/web/packages/gsrc

Pipeline to read and analyze raw SNP array data. The data is preprocessed and normalized. Genotypes and CNVs are called. Synteny blocks are calculated and translocations detected. The results can be plotted with special functions.

Maintainer: Fabian Grandke
Author(s): Fabian Grandke [cre, aut], Birgit Samans [aut]

License: GPL-3

Uses: Ckmeans.1d.dp, dbscan, openxlsx, R6, KernSmooth, mixtools, testthat, devtools, knitr, rmarkdown

Released about 1 year ago.