hagis (3.0.1)

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Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity.

https://github.com/openplantpathology/hagis
https://openplantpathology.github.io/hagis/
http://cran.r-project.org/web/packages/hagis

Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Lwer, Schachtel's (1999) Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.

Maintainer: Adam H. Sparks
Author(s): Austin G. McCoy [aut, ccp] (<https://orcid.org/0000-0003-2483-4184>), Zachary Noel [aut, ccp] (<https://orcid.org/0000-0001-6375-8300>), Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>), Martin Chilvers [aut] (<https://orcid.org/0000-0001-8832-1666>), Zhian N. Kamvar [ctb, rev] (<https://orcid.org/0000-0003-1458-7108>), Michigan Soybean Promotion Committee [fnd], Project GREEEN [fnd], North Central Soybean Research Program [fnd], GRDC Project DAQ00186 [fnd]

License: MIT + file LICENSE

Uses: data.table, ggplot2, pander, testthat, knitr, rmarkdown, covr, vdiffr

Released 5 months ago.


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