haplo.stats (1.7.9)
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous.
http://www.mayo.edu/research/labs/statisticalgeneticsgeneticepidemiology/software
http://cran.rproject.org/web/packages/haplo.stats
Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.
Maintainer:
Jason P. Sinnwell
Author(s): Sinnwell JP, Schaid DJ
License: GPL (>= 2)
Uses: rms, R.rsp
Reverse depends: BVS, GenABEL, haplo.ccs, IFP, mirf, SHARE, SNPassoc, trio
Reverse suggests: asymLD, gap, GenABEL, trio
Released over 1 year ago.
15 previous versions
 haplo.stats_1.7.7. Released over 3 years ago.
 haplo.stats_1.7.6. Released over 3 years ago.
 haplo.stats_1.7.1. Released about 4 years ago.
 haplo.stats_1.6.11. Released about 5 years ago.
 haplo.stats_1.6.8. Released almost 6 years ago.
 haplo.stats_1.6.3. Released almost 7 years ago.
 haplo.stats_1.6.1. Released almost 7 years ago.
 haplo.stats_1.5.8. Released almost 7 years ago.
 haplo.stats_1.5.6. Released about 7 years ago.
 haplo.stats_1.5.5. Released over 7 years ago.
 haplo.stats_1.5.2. Released almost 8 years ago.
 haplo.stats_1.4.4. Released about 10 years ago.
 haplo.stats_1.4.3.
 haplo.stats_1.3.8. Released almost 2019 years ago.
 haplo.stats_1.3.1. Released almost 2019 years ago.
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This package used in a new book
This recent book by Andrea Foulkes makes use of functions in haplo.stats:
http://people.umass.edu/foulkes/asg.html
Check it out!
sinnweja did not rate haplo.stats (1.4.4). Read the full review.
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