haplotyper (0.1)

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Tool for Clustering Genotypes in Haplotypes.

http://cran.r-project.org/web/packages/haplotyper

Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

Maintainer: Gaston Quero
Author(s): Sebastian Simondi <sebastian.simondi@gmail.com> and Gaston Quero, with contributions from Victoria Bonnecarrere and Lucia Gutierrez

License: GPL-3

Uses: testthat, knitr, rmarkdown

Released over 1 year ago.


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