kmeRs (1.1.0)

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K-Mers Similarity Score Matrix.

https://rafalurniaz.github.io/kmeRs/
http://cran.r-project.org/web/packages/kmeRs

Contains tools to calculate similarity score matrix for DNA k-mers. The pairwise similarity score is calculated using PAM or BLOSUM substitution matrix. The results are evaluated by similarity score calculated by Needleman-Wunsch (1970) global or Smith-Waterman (1981) local alignment. Higher similarity score indicates more similar sequences for BLOSUM and less similar sequences for PAM matrix; 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively.

Maintainer: Rafal Urniaz
Author(s): Rafal Urniaz [aut, cre] (<https://orcid.org/0000-0003-0192-2165>)

License: GPL-3

Uses: rDNAse, tcR, ape, knitr, rmarkdown

Released over 1 year ago.


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