kmer (1.1.0)

0 users

Fast K-Mer Counting and Clustering for Biological Sequence Analysis.

http://github.com/shaunpwilkinson/kmer
http://cran.r-project.org/web/packages/kmer

Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) for a review of k-mer counting methods and applications for biological sequence analysis.

Maintainer: Shaun Wilkinson
Author(s): Shaun Wilkinson [aut, cre]

License: GPL-3

Uses: openssl, phylogram, Rcpp, ape, testthat, knitr, dendextend, rmarkdown

Released 5 months ago.


3 previous versions

Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of kmer yet. Want to be the first? Write one now.


Related packages:(20 best matches, based on common tags.)


Search for kmer on google, google scholar, r-help, r-devel.

Visit kmer on R Graphical Manual.