kmer (1.0.2)

Fast K-Mer Counting and Clustering for Biological Sequence Analysis.

http://github.com/shaunpwilkinson/kmer
http://cran.r-project.org/web/packages/kmer

Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) for a review of k-mer counting methods and applications for biological sequence analysis.

Maintainer: Shaun Wilkinson
Author(s): Shaun Wilkinson [aut, cre]

License: GPL-3

Uses: openssl, phylogram, Rcpp, ape, testthat, knitr, rmarkdown

Released over 1 year ago.