mGSZ (1.0)

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Gene set analysis based on GSZ-scoring function and asymptotic p-value.

http://cran.r-project.org/web/packages/mGSZ

Performs gene set analysis based on GSZ scoring function and asymptotic p-value. It is different from GSZ in that it implements asymptotic p-values instead of empirical p-values. Asymptotic p-values are calculated by fitting suitable distribution model to the null distribution. Unlike empirical p-values, resolution of asymptotic p-values are independent of the number of permutations and hence requires considerably fewer permutations. In addition, this package allows gene set analysis with seven other popular gene set analysis methods.

Maintainer: Pashupati Mishra
Author(s): Pashupati Mishra, Petri Toronen

License: GPL (>= 2)

Uses: Does not use any package

Released about 5 years ago.


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