marked (1.2.1)

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Mark-Recapture Analysis for Survival and Abundance Estimation.

http://cran.r-project.org/web/packages/marked

Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.

Maintainer: Jeff Laake
Author(s): Jeff Laake <jefflaake@gmail.com>, Devin Johnson <devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>, example for simHMM from Jay Rotella

License: GPL (>= 2)

Uses: coda, expm, lme4, Matrix, numDeriv, optimx, R2admb, Rcpp, TMB, truncnorm, ggplot2
Reverse suggests: FSA

Released about 1 month ago.


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