marked (1.1.13)

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Mark-Recapture Analysis for Survival and Abundance Estimation.

Functions for fitting various models to capture-recapture data including fixed and mixed-effects Cormack-Jolly-Seber(CJS) for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. Includes a CJS models that concurrently estimates and corrects for tag loss. Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty.

Maintainer: Jeff Laake
Author(s): Jeff Laake <>, Devin Johnson <>, Paul Conn <>

License: GPL (>= 2)

Uses: coda, expm, lme4, Matrix, numDeriv, optimx, R2admb, Rcpp, TMB, truncnorm, ggplot2
Reverse suggests: FSA

Released about 1 year ago.

8 previous versions



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