mrMLM (3.1)

0 users

Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study.

http://cran.r-project.org/web/packages/mrMLM

Conduct multi-locus genome-wide association study under the framework of random-SNP-effect mixed linear model (mrMLM). First, each marker on the genome is scanned. Bonferroni correction is replaced by a less stringent selection criterion for significant test. Then, all the markers that are potentially associated with the trait are included in a multi-locus model, their effects are estimated by empirical Bayes and true QTN are identified by likelihood ratio test. Wen YJ, Zhang H, Ni YL, Huang B, Zhang J, Feng JY, Wang SB, Dunwell JM, Zhang YM, Wu R (2018) .

Maintainer: Yuanming Zhang
Author(s): Zhang Ya-Wen, Li Pei, Ren Wen-Long, Ni Yuan-Li, and Zhang Yuan-Ming

License: GPL (>= 2)

Uses: bigmemory, coin, data.table, doParallel, foreach, ggplot2, lars, MASS, ncvreg, openxlsx, qqman, sampling, stringr

Released 10 months ago.


7 previous versions

Ratings

Overall:

  (0 votes)

Documentation:

  (0 votes)

Log in to vote.

Reviews

No one has written a review of mrMLM yet. Want to be the first? Write one now.


Related packages:(20 best matches, based on common tags.)


Search for mrMLM on google, google scholar, r-help, r-devel.

Visit mrMLM on R Graphical Manual.