nanostringr (0.1.4)

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Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data.

https://github.com/OVCARE/nanostringr
https://ovcare.github.io/nanostringr
http://cran.r-project.org/web/packages/nanostringr

Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) . Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.

Maintainer: Derek Chiu
Author(s): Derek Chiu [aut, cre], Aline Talhouk [aut], Samuel Leung [aut]

License: MIT + file LICENSE

Uses: assertthat, ccaPP, dplyr, epiR, magrittr, purrr, rlang, testthat, knitr, rmarkdown, covr

Released 7 months ago.


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