netClass (1.2.1)

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netClass: An R Package for Network-Based Biomarker Discovery.

netClass is an R package for network-based feature (gene) selection for biomarkers discovery via integrating biological information. This package adapts the following 5 algorithms for classifying and predicting gene expression data using prior knowledge: 1) average gene expression of pathway (aep); 2) pathway activities classification (PAC); 3) Hub network Classification (hubc); 4) filter via top ranked genes (FrSVM); 5) network smoothed t-statistic (stSVM).

Maintainer: Yupeng Cun
Author(s): Yupeng Cun

License: GPL (>= 2)

Uses: graph, igraph, kernlab, Matrix, ROCR, samr, pathClass

Released over 6 years ago.

3 previous versions



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