outbreaker2 (1.1.0)

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Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data.


Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. . Campbell, F, Cori A, Ferguson N, Jombart T. 2019. .

Maintainer: Finlay Campbell
Author(s): Thibaut Jombart [aut], Finlay Campbell [aut, cre], Rich Fitzjohn [aut], Gerry Tonkin-Hill [ctb], Alexis Robert [ctb]

License: MIT + file LICENSE

Uses: ape, ggplot2, magrittr, Rcpp, visNetwork, coda, igraph, testthat, microbenchmark, knitr, rmarkdown, epicontacts

Released 5 months ago.

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