pastis (0.1-1)

Phylogenetic Assembly with Soft Taxonomic Inferences.

http://cran.r-project.org/web/packages/pastis/
http://cran.r-project.org/web/packages/pastis

A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints as per xxx. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.

Maintainer: Gavin Thomas
Author(s): Klaas Hartmann, Gavin Thomas, Arne Mooers, Jeffrey Joy, Walter Jetz

License: GPL (>= 3)

Uses: ape, caper

Released over 6 years ago.