pbatR (2.2-13)

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Pedigree/Family-Based Genetic Association Tests Analysis and Power.

http://sites.google.com/site/thomashoffmannproject/ http://bioinformatics.oxfordjournals.org/cgi/content/short/22/24/3103
http://cran.r-project.org/web/packages/pbatR

This R package provides power calculations via internal simulation methods. The package also provides a frontend to the now abandoned PBAT program (developed by Christoph Lange), and reads in the corresponding output and displays results and figures when appropriate. The license of this R package itself is GPL. However, to have the program interact with the PBAT program for some functionality of the R package, users must additionally obtain the PBAT program from Christoph Lange, and accept his license. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

Maintainer: Thomas Hoffmann
Author(s): Thomas Hoffmann <tjhoffm@gmail.com>, with contributions from Christoph Lange <clange@hsph.harvard.edu>

License: GPL

Uses: rootSolve, survival, kinship2

Released over 1 year ago.


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Related packages: Biodem, HardyWeinberg, LDheatmap, SNPmaxsel, adegenet, bqtl, gap, genetics, hapassoc, haplo.stats, hierfstat, hwde, ibdreg, ouch, qtl, rmetasim, seqinr, snp.plotter, stepwise, tdthap(20 best matches, based on common tags.)


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Visit pbatR on R Graphical Manual.