pegas (0.13)

Population and Evolutionary Genetics Analysis System.

http://ape-package.ird.fr/pegas.html
http://cran.r-project.org/web/packages/pegas

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

Maintainer: Emmanuel Paradis
Author(s): Emmanuel Paradis [aut, cre, cph] (<https://orcid.org/0000-0003-3092-2199>), Thibaut Jombart [aut, cph] (<https://orcid.org/0000-0003-2226-8692>), Zhian N. Kamvar [aut, cph] (<https://orcid.org/0000-0003-1458-7108>), Brian Knaus [aut, cph] (<https://orcid.org/0000-0003-1665-4343>), Klaus Schliep [aut, cph], Alastair Potts [aut, cph] (<https://orcid.org/0000-0003-0919-7279>), David Winter [aut, cph] (<https://orcid.org/0000-0002-6165-0029>)

License: GPL (>= 2)

Uses: adegenet, ape, rgl
Reverse depends: adhoc, coalescentMCMC, kernelPop, msap, PopGenReport, poppr, rmetasim, spider, StAMPP
Reverse suggests: adegenet, BarcodingR, gstudio, hierfstat

Released 3 months ago.