phangorn (2.3.1)

1 user

Phylogenetic Reconstruction and Analysis.

https://github.com/KlausVigo/phangorn
http://cran.r-project.org/web/packages/phangorn

Package contains methods for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Allows to compare trees, models selection and offers visualizations for trees and split networks.

Maintainer: Klaus Schliep
Author(s): Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Leonardo de Oliveira Martins [aut], Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb]

License: GPL (>= 2)

Uses: ape, fastmatch, igraph, magrittr, Matrix, quadprog, Rcpp, rgl, seqinr, xtable, flashClust, testthat, knitr, rmarkdown
Reverse depends: apex, coalescentMCMC, corHMM, MonoPhy, OUwie, phybreak, phytools, poppr, recluster
Reverse suggests: markophylo

Released about 1 month ago.


36 previous versions

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Related packages: ape, ouch, rmetasim, geiger, pegas, apTreeshape, PHYLOGR, phylobase, paleoTS, phytools, adegenet, Biodem, bqtl, dlmap, gap, GenABEL, genetics, hapassoc, haplo.ccs, HardyWeinberg(20 best matches, based on common tags.)


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