phangorn (2.5.3)

Phylogenetic Reconstruction and Analysis.

Package contains methods for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Allows to compare trees, models selection and offers visualizations for trees and split networks.

Maintainer: Klaus Schliep
Author(s): Klaus Schliep [aut, cre] (<>), Emmanuel Paradis [aut] (<>), Leonardo de Oliveira Martins [aut] (<>), Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb]

License: GPL (>= 2)

Uses: ape, fastmatch, igraph, magrittr, Matrix, quadprog, Rcpp, rgl, seqinr, xtable, testthat, knitr, rmarkdown, vdiffr
Reverse depends: apex, coalescentMCMC, corHMM, MonoPhy, OUwie, phybreak, phytools, poppr, recluster
Reverse suggests: CongreveLamsdell2016, markophylo, Quartet, tracerer

Released 2 months ago.