phylosim (0.11)

R packge for simulating biological sequence evolution.

http://github.com/sbotond/phylosim
http://cran.r-project.org/web/packages/phylosim

PhyloSim is an extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions.

Maintainer: Botond Sipos
Author(s): Botond Sipos <sbotond@ebi.ac.uk>, Gregory Jordan <greg@ebi.ac.uk>

License: GPL (>= 3)

Uses: ape, compoisson, ggplot2, R.oo, R.oo, ggplot2, compoisson
Reverse depends: pcrcoal

Released about 9 years ago.