plsgenomics (1.5)

PLS Analyses for Genomics.

https://CRAN.R-project.org/package=plsgenomics
http://cran.r-project.org/web/packages/plsgenomics

Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.

Maintainer: Ghislain Durif
Author(s): Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>, Ghislain Durif <gd.dev@libertymail.net>, Sophie Lambert-Lacroix <sophie.lambert-lacroix@univ-grenoble-alpes.fr>, Julie Peyre <Julie.Peyre@univ-grenoble-alpes.fr>, and Korbinian Strimmer <k.strimmer@imperial.ac.uk>.

License: GPL (>= 2)

Uses: boot, fields, MASS, plyr, reshape2, RhpcBLASctl
Reverse depends: MAclinical
Reverse suggests: PLSbiplot1

Released over 2 years ago.