plsgenomics (1.5-2)

PLS Analyses for Genomics.

Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.

Maintainer: Ghislain Durif
Author(s): Anne-Laure Boulesteix <>, Ghislain Durif <>, Sophie Lambert-Lacroix <>, Julie Peyre <>, and Korbinian Strimmer <>.

License: GPL (>= 2)

Uses: boot, fields, MASS, plyr, reshape2, RhpcBLASctl
Reverse depends: MAclinical
Reverse suggests: PLSbiplot1

Released almost 2 years ago.