ppiPre (1.9)

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Predict Protein-Protein Interactions Based on Functional and Topological Similarities.

http://cran.r-project.org/web/packages/ppiPre

Computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates seven features (TCSS, IntelliGO, Wang, KEGG, Jaccard, RA and AA) to predict PPIs using an SVM classifier. Some internal functions to calculate GO semantic similarities are re-used from R package GOSemSim authored by Guangchuang Yu.

Maintainer: Yue Deng
Author(s): Yue Deng, Rongjie Shao, Gang Wang and Yuanjun Sun

License: GPL-2

Uses: e1071, igraph

Released over 4 years ago.


7 previous versions

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