ppiPre (1.6)

Predict protein-protein interactions based on functional and topological similarities..

http://cran.r-project.org/web/packages/ppiPre

This package provides functions for computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates seven features (TCSS, IntelliGO, Wang, KEGG, Jaccard, RA and AA) to predict PPIs using an SVM classifier. Some internal functions are derived from R package GOSemSim authored by Guangchuang Yu.

Maintainer: Yue Deng
Author(s): Yue Deng, Rongjie Shao, Gang Wang and Yuanjun Sun, with contributions from Guangchuang Yu.

License: GPL-2

Uses: Does not use any package

Released about 4 years ago.