ratematrix (1.2.1)

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Bayesian Estimation of the Evolutionary Rate Matrix.


Estimates the evolutionary rate matrix (R) using Markov chain Monte Carlo (MCMC) as described in Caetano and Harmon (2017) . The package has functions to run MCMC chains, plot results, evaluate convergence, and summarize posterior distributions.

Maintainer: Daniel Caetano
Author(s): Daniel Caetano [aut, cre], Luke Harmon [aut]

License: GPL (>= 2.0)

Uses: ape, coda, corpcor, ellipse, geiger, MASS, mvMORPH, phylolm, Rcpp, readr, microbenchmark, phytools, knitr, rmarkdown

Released 6 months ago.

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Related packages: PHYLOGR, apTreeshape, geiger, ggplot2, ouch, paleoTS, rmetasim, vegan, ape, phangorn, picante, MCMCglmm, metafor, pegas, phylobase, adephylo, phyloclim, BoSSA, phyclust, TreeSim(20 best matches, based on common tags.)

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