rhierbaps (1.1.0)

Clustering Genetic Sequence Data Using the HierBAPS Algorithm.

https://github.com/gtonkinhill/rhierbaps
http://cran.r-project.org/web/packages/rhierbaps

Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.

Maintainer: Gerry Tonkin-Hill
Author(s): Gerry Tonkin-Hill [cre, aut]

License: MIT + file LICENSE

Uses: ape, ggplot2, LambertW, matrixStats, purrr, testthat, phytools, knitr, rmarkdown

Released 6 days ago.