rmRNAseq (0.1.0)

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RNA-Seq Analysis for Repeated-Measures Data.


A differential expression analysis method for RNA-seq data from repeated-measures design using general linear model framework and parametric bootstrap inference. The method accounts for the dependence of gene expression levels due to the repeated-measures through continuous autoregressive correlation structure. The method is described in Chapter 4 of Nguyen (2018) .

Maintainer: Yet Nguyen
Author(s): Yet Nguyen [aut, cre], Dan Nettleton [aut], Charity Gordon Law Smyth [ctb] (The authors of limma::voom, which was modified slightly leading to my_voom), Agata Michna [ctb] (The author of splineTimeR::splineDiffExprs, which was modified slightly leading to my_splineDiffExprs)

License: GPL (>= 2)

Uses: AUC, MASS, Matrix, nlme, reshape, rlang, statmod, testthat, knitr, rmarkdown

Released 4 days ago.



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