rsgcc (1.0.4)

Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data.

http://cran.r-project.org/web/packages/rsgcc

This package provides functions for calculating associations between two genes with the mutual informaiton (MI) method and several correlation methods, including the Gini correlation coefficient (GCC), the Pearson's product moment correlation coefficient (PCC), the Kendall tau rank correlation coefficient (KCC), the Spearman's rank correlation coefficient (SCC) and the Tukey's biweight correlation coefficient (BiWt). It can also been implemented to perform the correlation and clustering analysis of transcriptomic data profiled by microarray and RNA-Seq technologies. Additionally, this package can be further applied to construct gene co-expression networks (GCNs).

Maintainer: Chuang Ma
Author(s): Chuang Ma, Xiangfeng Wang

License: GPL (>= 2)

Uses: biwt, cairoDevice, fBasics, gplots, gWidgets, gWidgetsRGtk2, parmigene, snowfall, stringr
Reverse depends: mlDNA

Released over 7 years ago.