rtfbs (0.2)

R Transcription Factor Binding Site identification tool.

http://compgen.bscb.cornell.edu/rtfbs
http://cran.r-project.org/web/packages/rtfbs

RTFBS identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by GC content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.

Maintainer: Melissa Hubisz
Author(s): Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel

License: BSD

Uses: rphast

Released over 7 years ago.