rtfbs (0.3.3)

R Transcription Factor Binding Site identification tool.

http://compgen.cshl.edu/rtfbs
http://cran.r-project.org/web/packages/rtfbs

RTFBS identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by G+C content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.

Maintainer: Melissa Hubisz
Author(s): Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel

License: BSD_3_clause + file LICENSE

Uses: Does not use any package

Released almost 5 years ago.