rtfbs (0.3.9)

Transcription Factor Binding Site Identification Tool.


Identifies and scores possible Transcription Factor Binding Sites and allows for FDR analysis and pruning. It supports splitting of sequences based on size or a specified GFF, grouping by G+C content, and specification of Markov model order. The heavy lifting is done in C while all results are made available via R.

Maintainer: Ritika Ramani
Author(s): Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam Siepel

License: BSD_3_clause + file LICENSE

Uses: rphast

Released about 2 years ago.