ruv (0.9.7)

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Detect and Remove Unwanted Variation using Negative Controls.

http://www-personal.umich.edu/~johanngb/ruv/
http://cran.r-project.org/web/packages/ruv

Implements the 'RUV' (Remove Unwanted Variation) algorithms. These algorithms attempt to adjust for systematic errors of unknown origin in high-dimensional data. The algorithms were originally developed for use with genomic data, especially microarray data, but may be useful with other types of high-dimensional data as well. These algorithms were proposed by Gagnon-Bartsch and Speed (2012), and by Gagnon-Bartsch, Jacob and Speed (2013). The algorithms require the user to specify a set of negative control variables, as described in the references. The algorithms included in this package are 'RUV-2', 'RUV-4', 'RUV-inv', 'RUV-rinv', 'RUV-I', and RUV-III', along with various supporting algorithms.

Maintainer: Johann Gagnon-Bartsch
Author(s): Johann Gagnon-Bartsch <johanngb@umich.edu>

License: GPL

Uses: ggplot2, gridExtra, scales, shiny, colourpicker

Released over 1 year ago.


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