scoper (0.2.0)

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Spectral Clustering-Based Method for Identifying B Cell Clones.

https://scoper.readthedocs.io
http://cran.r-project.org/web/packages/scoper

Provides a computational framework for B cell clones identification from adaptive immune receptor repertoire sequencing (AIRR-Seq) datasets. Three models are included (identical, hierarchical, and spectral) that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins) which share the same V gene, J gene and junction length. Nouri N and Kleinstein SH (2018) . Gupta NT, et al. (2017) .

Maintainer: Nima Nouri
Author(s): Nima Nouri [aut, cre], Jason Vander Heiden [ctb], Steven Kleinstein [aut, cph]

License: CC BY-SA 4.0

Uses: alakazam, data.table, doParallel, dplyr, foreach, ggplot2, Rcpp, rlang, seqinr, shazam, stringi, stringr, testthat, knitr, rmarkdown

Released 20 days ago.


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