sctransform (0.2.0)

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Variance Stabilizing Transformations for Single Cell UMI Data.

https://github.com/ChristophH/sctransform
http://cran.r-project.org/web/packages/sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 for more details.

Maintainer: Christoph Hafemeister
Author(s): Christoph Hafemeister [aut, cre] (<https://orcid.org/0000-0001-6365-8254>)

License: GPL-3 | file LICENSE

Uses: future, future.apply, ggplot2, gridExtra, MASS, Matrix, Rcpp, reshape2, testthat, irlba

Released 7 months ago.


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